This page gives links to software and supplementary materials for the following papers:

- Robinson, MD and Smyth GK (2007)

Moderated Statistical Tests for Assessing Differences in Tag Abundance,

Bioinformatics. 23(21):2881-7.

[R package - tar]
[R package - windows]
[Table of DE tags for Zhang et al. dataset]
[Zhang et al. dataset]
[R commands for Zhang analysis]

The 'msage' software package is now called 'edgeR' and is available from the Bioconductor project, see the following link:

http://www.bioconductor.org/packages/release/bioc/html/edgeR.html

- Robinson, MD and Smyth, GK (2008)

Small Sample Estimation of Negative Binomial Dispersion, with applications to SAGE data,

Biostatistics. 9(2):321-32.

[R package] [R commands]

[updated 11/06/2009].