msage {msage}R Documentation

Compute moderate differential expression scores for SAGE

Description

Run weighted likelihood calculation of likelihood ratio tests for SAGE data

Usage

 msage(x,alpha=0.5) 

Arguments

x list containing elements data (matrix: rows-tags, columns-libraries), lib.size group indicating class
alpha weight to put on the individual tag's likelihood

Value

list with elements lr (likelihood ratio test), r (estimates of 1/overdispersion), ps (list containing proportion estimates)

Author(s)

Mark Robinson

Examples

data(msage)
z<-msage(foo)

[Package msage version 0.7 Index]