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FlaGMe: Fragment-level analysis of GCMS-based metabolomics data
R Software for GCMS.
Supplementary Information: Differential Expression for DGE data
Referenced by:
Robinson MD and Smyth GK. (2007)
Moderated statistical tests for assessing differences in tag abundance.
Bioinformatics.
Supplementary Information: Background Correction for microarrays
Referenced by:
Ritchie ME, Silver, J., Oshlack A, Diyagama D, Holloway A & Smyth GK. (2007)
A comparison of background correction methods for two-colour microarrays.
Submitted.
Data files: Boutique Array Normalization
From the paper:
Oshlack A, Emslie D, Corcoran L, & Smyth GK.
Normalization of boutique two-color microarrays with a high proportion of differentially expressed probes
Supplementary Information: Mixture
Referenced by:
Holloway AJ, Oshlack A, Diyagama DS, Bowtell DDL & Smyth GK.
Statistical analysis of an RNA titration series evaluates microarray precision and sensitivity on a whole-array basis
Supplementary Information: arrayWeights
Referenced by:
Ritchie ME, Diyagama D, Neilson J, van Laar R, Dobrovic A, Holloway A & Smyth GK.
Empirical array quality weights in the analysis of microarray data.
BMC Bioinformatics 7, Article 261. [PubMed
Abstract] [Publisher
Full Text]
Supplementary materials for
Smyth, G. K., Michaud, J., and Scott, H. (2005). The use of
within-array replicate spots for assessing differential expression
in microarray experiments. Bioinformatics 21(9),
2067-2075.
Microarray
Database Resources Page
Referenced by:
A J Holloway, R K van Laar, R W Tothill & D D L Bowtell
Options available from start to finish for obtaining data from
DNA microarrays II
Nature Genetics, volume 32 supplement pp 481 - 489
Marcoil Homepage
Referenced by:
Delorenzi M, Speed T.
An HMM model for coiled-coil domains and a comparison with PSSM-based predictions.
Bioinformatics. 2002 Apr;18(4):617-25.
Phat Homepage
Referenced by:
Cawley SE, Wirth AI, Speed TP.
Phat--a gene finding program for Plasmodium falciparum.
Mol Biochem Parasitol. 2001 Dec;118(2):167-74.
ParaCountStudio Homepage
Referenced by:
Trends in Parisitology, Dec 2005
If you don't find what you're looking for here, please let us know by contacting bioinf@wehi.edu.au
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