Data files and R code for

Differential methylation analysis of reduced representation bisulfite sequencing experiments using edgeR

Yunshun Chen, Bhupinder Pal, Jane E. Visvader and Gordon K. Smyth

F1000Research (2017).

Data files

The target information of the RRBS data is included in the following tab-delimited text file. The compressed Bismark coverage outputs of all six samples described in the paper are available below. The RNA-seq gene expression data and the list of differentially expressed genes used in the workflow are available below.

R code

The following file contains the R commands used in the workflow:

 


Comments/Questions? Contact Gordon Smyth.
Last modified: 01 November 2017