Data Files: Normalization of boutique two-color microarrays with a high proportion of differentially expressed probes

Alicia Oshlack¹, Diane Emslie¹, Lynn Corcoran¹ and Gordon K. Smyth¹

1. The Walter and Eliza Hall Institute of Medical Research.

Data

Raw data files used for to assess the normalization method. These files can be read into the R programming language and analysed using the limma package.

• Figure 1 array
• Figure 1 Gal file
• Figure 3 arrays
• Figure 3 Gal file
• Figure 4a data
• Figure 4b data
• Figure 5a data
• Figure 5b data
• Figure 5c data
• Figure 5d data

Spottypes files are also provided for analysis using limma in R.

• Figure 1: spottypes file
• Figure 3: spottypes file
• Figure 4 and 5: spottypes file

Data for Figure 1 and Figure 3 were extracted using the spot software package and therefore the gal files are required when analysing the data. The data from the boutique arrays for figures 4 and 5 was extracted using genepix software and can be read straight into most analysis programs.