Data files and R code for

Differential methylation analysis of reduced representation bisulfite sequencing experiments using edgeR

Yunshun Chen, Bhupinder Pal, Jane E. Visvader and Gordon K. Smyth

F1000Research (2017, revised 2018) 6:2055
DOI: 10.12688/f1000research.13196.2

Corrected Preprint

Data files

The target information of the RRBS data is included in the following tab-delimited text file. The compressed Bismark coverage outputs of all six samples described in the paper are available below. The RNA-seq gene expression data and the list of differentially expressed genes used in the workflow are available below.

R code

The following files contain the R commands used in the workflow:


Comments/Questions? Contact Gordon Smyth.
Last modified: 30 July 2019