| Rank | Heatmaps | ID | GeneSet | BroadUrl | Description | PubMedID | NumGenes | Contributor | p.value | p.adj | vote.rank | avg.rank | med.rank | min.pvalue | min.rank | avg.logfc | avg.logfc.dir | direction | significance | camera | safe | gage | padog | plage | zscore | gsva | ssgsea | globaltest | ora | fry | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| LIM_MAMMARY_STEM_CELL_DN | 1 | Show Map Interpret Results | M2574 | LIM MAMMARY STEM CELL DN | Go to Broad | Genes consistently down-regulated in mammary stem ... | 20346151 | 572/695 | Daniel Hollern | 0 | 0 | 5 | 628.73 | 37 | 0 | 1 | 2.22 | -2.26 | Down | 17.96 | 2 | 1116 | 4715 | 1 | 800 | 1 | 77 | 2 | 156 | 37 | 9 |
| LIM_MAMMARY_LUMINAL_PROGENITOR_UP | 2 | Show Map Interpret Results | M2575 | LIM MAMMARY LUMINAL PROGENITOR UP | Go to Broad | Genes consistently up-regulated in mammary luminal ... | 20346151 | 79/91 | Daniel Hollern | 0 | 0 | 5 | 173.27 | 47 | 0 | 2 | 3.85 | -4.03 | Down | 46.05 | 3 | 85 | 17 | 2 | 1237 | 6 | 39 | 94 | 47 | 50 | 326 |
| MONTERO_THYROID_CANCER_POOR_SURVIVAL_UP | 3 | Show Map Interpret Results | M11629 | MONTERO THYROID CANCER POOR SURVIVAL UP | Go to Broad | Up-regulated genes predicting poor survival of pat ... | 17873908 | 14/14 | Arthur Liberzon | 1e-06 | 1e-06 | 60 | 386.27 | 58 | 0 | 19 | 2.77 | 2.92 | Up | 6.54 | 58 | 834 | 427 | 57 | 2081 | 30 | 19 | 57 | 23 | 508 | 155 |
| SMID_BREAST_CANCER_LUMINAL_A_DN | 4 | Show Map Interpret Results | M13072 | SMID BREAST CANCER LUMINAL A DN | Go to Broad | Genes down-regulated in the luminal A subtype of b ... | 18451135 | 23/24 | Jessica Robertson | 0 | 1e-06 | 40 | 371.18 | 62 | 0 | 2 | 2.65 | 2.65 | Up | 6.44 | 37 | 701 | 666 | 62 | 1619 | 20 | 2 | 58 | 34 | 710 | 174 |
| NAKAYAMA_SOFT_TISSUE_TUMORS_PCA2_UP | 5 | Show Map Interpret Results | M2761 | NAKAYAMA SOFT TISSUE TUMORS PCA2 UP | Go to Broad | Top 100 probe sets contrubuting to the positive si ... | 17464315 | 132/209 | Nikolaos Papanikolaou | 0 | 0 | 15 | 391.91 | 70 | 0 | 4 | 2.64 | 2.78 | Up | 21.01 | 11 | 1472 | 45 | 47 | 1507 | 4 | 70 | 196 | 717 | 59 | 183 |
| REACTOME_LATENT_INFECTION_OF_HOMO_SAPIENS_WITH_MYCOBACTERIUM_TUBERCULOSIS | 6 | Show Map Interpret Results | M683 | REACTOME LATENT INFECTION OF HOMO SAPIENS WITH MYCOBACTERIUM TUBERCULOSIS | Go to Broad | Genes involved in Latent infection of Homo sapiens ... | 26/38 | Reactome | 0 | 0 | 5 | 849.09 | 73 | 0 | 3 | 1.96 | -1.94 | Down | 4.92 | 73 | 1817 | 1956 | 1393 | 42 | 5 | 3 | 24 | 1708 | 2308 | 11 | |
| REACTOME_TRANSFERRIN_ENDOCYTOSIS_AND_RECYCLING | 7 | Show Map Interpret Results | M991 | REACTOME TRANSFERRIN ENDOCYTOSIS AND RECYCLING | Go to Broad | Genes involved in Transferrin endocytosis and recy ... | 24/29 | Reactome | 0 | 1e-06 | 80 | 803.36 | 79 | 0 | 5 | 1.94 | -1.94 | Down | 4.8 | 79 | 1834 | 2324 | 996 | 114 | 11 | 5 | 8 | 19 | 3415 | 32 | |
| FARMER_BREAST_CANCER_CLUSTER_2 | 8 | Show Map Interpret Results | M17333 | FARMER BREAST CANCER CLUSTER 2 | Go to Broad | Cluster 2: selected proliferation and 8q amplicon ... | 15897907 | 45/72 | Leona Saunders | 0 | 1e-06 | 45 | 191.64 | 104 | 0 | 18 | 2.27 | 2.48 | Up | 5.57 | 42 | 361 | 481 | 59 | 324 | 18 | 37 | 104 | 65 | 352 | 265 |
| KEGG_EPITHELIAL_CELL_SIGNALING_IN_HELICOBACTER_PYLORI_INFECTION | 9 | Show Map Interpret Results | M16848 | KEGG EPITHELIAL CELL SIGNALING IN HELICOBACTER PYLORI INFECTION | Go to Broad | Epithelial cell signaling in Helicobacter pylori i ... | 82/91 | KEGG | 0 | 1e-06 | 30 | 451.82 | 107 | 0 | 8 | 1.92 | -1.98 | Down | 4.75 | 30 | 185 | 1373 | 610 | 107 | 8 | 40 | 59 | 942 | 1570 | 46 | |
| LANDIS_BREAST_CANCER_PROGRESSION_UP | 10 | Show Map Interpret Results | M6875 | LANDIS BREAST CANCER PROGRESSION UP | Go to Broad | Genes up-regulated in preneoplastic mammary tissue ... | 16434967 | 55/57 | Lauren Kazmierski | 0 | 1e-06 | 110 | 326.09 | 107 | 0 | 41 | 2.25 | -2.36 | Down | 5.63 | 41 | 377 | 1114 | 61 | 57 | 101 | 107 | 81 | 107 | 1350 | 191 |