GOseq
About
This R package is designed for performing GO analysis on RNA-seq data, accounting for the selection bias effects inherent to this platform. It can also be used to perform other category based tests, such as KEGG pathway analysis. For more information see the cited article below, or the package documentation.
Package Downloads
Package source:
Latest version (0.99.7): goseqOld versions: Old Versions
Note: The latest version of goseq contains some fairly major changes in the way data is fetched which have not yet been fully tested. If you experience any issues with the data fetching procedure, please email the package maintainer at myoung@wehi.edu.au. You might also like to try using the old version "0.1.5".
User's Guide
VignetteVersion Track
Change logCitation
To reference GOseq, please cite:Gene ontology analysis for RNA-seq: accounting for selection bias
Matthew D. Young, Matthew J. Wakefield, Gordon K. Smyth, Alicia Oshlack
Genome Biology 2010, 11:R14 (4 February 2010)