Mutation Age Estimation
Mutation age estimation can now be performed with an R shiny tool that implements the previous R code (below) with a user friendly GUI found at:https://shiny.wehi.edu.au/rafehi.h/mutation-dating/
The original R function is Mutation_Age_estimation.R, which is a simple R script that performs the calculations required to produce mutation age estimates and confidence intervalsusing the method described in Gandolfo, L. C., Bahlo, M., and Speed, T. P. (2014). Dating rare mutations from small samples with dense marker data. Genetics, 197(4): 1315-27. Documentation can be found here.