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(Examples of each format)

1. An example of a genotyping input file in AGRF format:

Sample No. Marker Allele 1 Allele 2 Allele 1 Allele 2
1 D10Mit106 124 124 124.17 124.17
3 D10Mit106 124 124 124.26 124.26
4 D10Mit106 129 129 129.37 129.37
5 D10Mit106 124 124 124.25 124.25
9 D10Mit106 124 124 124.28 124.28
...........
389 D10Mit106 124 Failed 26.07 140.25
393 D10Mit106 124 129 23.91 129.59
B6 D10Mit106 124 124 26.08 124.65
NOD D10Mit106 129 129 129.63 129.63
1 D10Mit14 184 184 184.45 184.45
3 D10Mit14 184 190 184.33 190.61

*NOTE: The parental alleles for a particular marker appear after each marker.

Click here to go to the AGRF website.


2. An example of a genotyping input file in Hilton Lab format:

Sample Info Dname Peak1 Peak2 Peak1 Peak2
B31 D1Mit231 Balb Balb Balb Balb
B36 D1Mit231 C57 C57 C57 C57
B89 D1Mit231 Balb C57 Balb C57
B107 D1Mit231 Balb C57 Balb C57
B108 D1Mit231 Balb C57 Balb C57
B112 D1Mit231 C57 C57 C57 C57
B114 D1Mit231 Balb C57 Balb C57
.....
B152 D1Mit231 C57 C57 C57 C57
B216 D1Mit231 Balb Balb Balb Balb
B224 D1Mit231 Balb C57 Balb C57
B31 D1Mit212 failed failed failed failed
B36 D1Mit212 C57 C57 C57 C57
B89 D1Mit212 failed failed failed failed
B107 D1Mit212 Balb Balb Balb Balb

*NOTE: this file format does not require any stipulation of maternal and paternal
strains. However strain names in the genotyping input file must match the strain names
in the input line.

3. An example of a genotyping input file in Embryonic Lethal format:

Order Status Mouse Marker Chrom Position Strain Strain Summary
1 MUM EL17A1 D1Mit231 1 8.7 - -
2 EL17B1 D1Mit231 1 8.7 C57 129
3 EL17B2 D1Mit231 1 8.7 C57 C57
4 EL17B3 D1Mit231 1 8.7 C57 129
......
23 EL17B26 D1Mit231 1 8.7 C57 C57
24 EL17B27 D1Mit231 1 8.7 C57 C57
25 EL17B28 D1Mit231 1 8.7 C57 129
26 EL17B29 D1Mit231 1 8.7 C57 129
27 EL17B30 D1Mit231 1 8.7 C57 129
28 MUM EL20A1 D1Mit231 1 8.7 C57 C57
29 EL20B9 D1Mit231 1 8.7 C57 129
30 EL20B10 D1Mit231 1 8.7 C57 C57
31 EL20B11 D1Mit231 1 8.7 C57 C57
32 EL20B12 D1Mit231 1 8.7 C57 C57
....
44 EL20B24 D1Mit231 1 8.7 C57 C57
46 EL20B26 D1Mit231 1 8.7 C57 129
47 EL20B27 D1Mit231 1 8.7 C57 129
48 MUM EL20A2 D1Mit231 1 8.7 C57 129
49 EL20B1 D1Mit231 1 8.7 C57 129
50 EL20B2 D1Mit231 1 8.7 C57 C57
51 EL20B3 D1Mit231 1 8.7 C57 C57
52 EL20B4 D1Mit231 1 8.7 C57 129