Analysis of Designed Microarray Experiments

Statistical Methods in Microarray Analysis Tutorial
Institute for Mathematical Sciences, National University of Singapore
January 3, 2004

Gordon Smyth
Walter and Eliza Hall Institute of Medical Research

Required Materials

• LIMMA 1.3.9 package for R available from http://bioinf.wehi.edu.au/limma
• Microarray data sets:
  • Firstarray GenePix Data (0.99Mb)
  • Swirl Zebrafish Data (2.4Mb)
  • ApoAI Knockout Data (1.2Mb)
  Each of these zip files should be unpacked into the directory c:\R on your computer.
• Hands-On Lab Manual
  • Manual in html format (for online viewing)
  • Manual in pdf format (for printing)