AMATA 2008
Gordon Smyth, Mark Robinson and Mik Black
15 November 2008
Walter and Eliza Hall Institute of
Medical Research
and University of Otago
This laboratory explores some of the features of Bioconductor and the limma package in particular for assessing differential expression in microarray experiments. Examples are included of cDNA two-colour microarrays and Affymetrix one-channel microarrays.
All materials for the computer laboratories can be downloaded in this rar archive file:
The file unpacks to a directory amata2008 with subdirectories amata2008/data and amata2008/hmtl. Workshop participants should make amata2008/data their R working directory, and should open amata2008/html/index.html in their browser.