GABOS Installation Notes.
GABOS (Get A Bit Of Sequence) is a tool to retrieve sequence data from a range of genomes for various
GABOS requires a local copy of some genome fasta files and, optionally, some annotation files for each genome.
A typical structure is shown below:
database/
-->genomes/
---->UCSC/
------>hg18/
-------->chromsomes/
---------->chr1.fa
---------->chr2.fa
---------->chr3.fa
---------->chr4.fa
----------> ...
-------->database/
---------->refGene.sql
---------->refGene.txt
---------->refGene.txt.indexed
---------->refGene.txt.sorted
---------->refFlat.sql
---------->refFlat.txt
---------->refFlat.txt.indexed
---------->refFlat.txt.sorted
----------> ...
------>mm9
similar for this genome
------>rn4
and so on ...