Tim Beißbarth's Home Page
Short Vita:
Degrees:
- Diploma (Masters) in Biology - 1.1998
University of Cologne. Subjects: Genetics, Biochemistry, Informatics. (Mark: 1.0)
Thesis (German): "Interaktion von MHC-Klasse-I mit dem Peptidtransporter TAP -
Characterisierung von HLA-A2 Mutanten in der lymphoblastoiden Cellinie C1R"
- PhD in Biology (Dr. rer nat) - 11.2001
Biology faculty, University Heidelberg (Mark: 1.0)
Thesis (English): "Analysis of transcription factor CREM dependent gene expression during mouse spermatogenesis"
Publications
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Increased Efficiency of Folding and Peptide Loading of Mutant MHC Class I Molecules;
Beissbarth T, Sun J, Kavathas PB, Ortmann B
European Journal of Immunology; 4.2000; 30(4): 1203-1213.
Paper Alert in Current Opinion in Immunology 2000, 12: 355-364.
-
Processing and quality control of DNA array hybridization data
Beissbarth T, Fellenberg K, Brors B, Arribas-Prat R, Boer JM, Hauser NC, Scheideler M,
Hoheisel JD, Schuetz G, Poustka A, Vingron M
Bioinformatics; 11.2000; 16(11): 1014-1022.
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GeneNest: automated generation and visualization of gene indices
Haas S, Beissbarth T, Rivals E, Krause A, Vingron M
Trends in Genetics; 11.2000; 16(11): 521-523
- Monitoring the switch from housekeeping to pathogen defence metabolism in Arabidopsis thaliana using cDNA arrays
Scheideler M, Schlaich NL, Fellenberg K, Beissbarth T, Hauser NC, Vingron M, Slusarenko AJ, Hoheisel JD
Journal of Biological Chemistry; 3.2002; 277(12): 10555-10561.
- Analysis of CREM-dependent gene expression during mouse spermatogenesis
Beissbarth T, Borisevich I, Hoerlein A, Kenzelmann M, Hergenhahn M, Klewe-Nebenius A, Klaeren R, Korn B, Schmid W, Vingron M, Schuetz G
Molecular and Cellular Endocrinology; 12.2003; 212(1-2): 29-39.
- GOstat: Find statistically overrepresented Gene Ontologies within a group of genes
Beissbarth T, Speed TP
Bioinformatics, 6.2004; 20(9): 1464-1465.
- Statistical modeling of sequencing errors in SAGE libraries
Beissbarth T, Hyde L, Smyth GK, Job C, Boon WM, Tan SS, Scott HS, Speed TP
Bioinformatics; 7.2004; 20(ISMB Supplement 1), I31-I39.
- A comparative analysis of transcribed genes in the mouse hypothalamus and neocortex reveals chromosomal clustering
Boon WM, Beissbarth T, Hyde L, Smyth GK, Gunnersen J, Denton DA, Scott HS, Tan SS
Proc Natl Acad Sci USA; 10.2004; 101(21); 14972-14977.
- A systematic approach for comprehensive T-cell epitope discovery using peptide libraries.
Beissbarth T, Tye-Din JA, Smyth GK, Speed TP, Anderson RP
Bioinformatics; 7.2005; 21(ISMB Supplement 1), in press.
Other Documents
- How does the Transporter associated with Antigen Processing influence folding and assembly of
MHC class I molecules.
Slides
- Transcription Profiling using DNA Array Data
Poster
- How to arrange gene expression profiles in linear order
Poster
- Correspondence Analysis, Gene Ontologies and microarray data.
Poster
- GOstat - Find statistically overrepresented Gene Ontologies within a group of genes
Poster
- Identification of putative transcription factor binding sites conserved across othologous human, mouse and rat sequences
Poster
Address
DKFZ MGA (B050)
Tim Beißbarth, Bioinformatics
(Office: TP3, INF 580, Room 2.109)
Im Neuenheimer Feld 280
69120 Heidelberg / Germany
Phone: +49 6221 424709
Fax: +49 6221 423454
Email: t.beissbarth@dkfz.de
Tim Beißbarth - Last Change: 01.March.2005