Bioinformatics Seminars

Bioinformatics Seminar

Time: 11AM
Venue: Zoom Webinar

14 December 2021

BioNix: functional, highly reproducible bioinformatics workflows

Justin Bedo
WEHI Bioinformatics

A challenge for computational biologists is to make our analyses reproducible - that is, easy to rerun, combine, and share, with the assurance that equivalent runs will generate identical results. Current best practice aims at this using a combination of package managers, workflow engines, and containers.

BioNix is a lightweight library built on the Nix deployment system that manages software dependencies, computational environments, and workflow stages together using a single abstraction: pure functions. BioNix lets users specify workflows in a clean, uniform way, with strong reproducibility guarantees.

In this talk I will discuss experiences gained from using the system at scale, issues encountered, and current development directions.


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