Rank ID GeneSet BroadUrl Description PubMedID NumGenes Contributor p.value p.adj vote.rank avg.rank med.rank min.pvalue min.rank avg.logfc avg.logfc.dir direction significance 1 M2573 LIM_MAMMARY_STEM_CELL_UP http://www.broadinstitute.org/gsea/msigdb/cards/LIM_MAMMARY_STEM_CELL_UP.html Genes consistently up-regulated in mammary stem cells both in mouse and human species. 20346151 390/782 Daniel Hollern 4.1512031285418e-163 1.94525378603469e-159 5 342.030303030303 4 1.25794034198232e-164 1 1.96360580757177 2.00052877027117 1 82.5778671767903 2 M2574 LIM_MAMMARY_STEM_CELL_DN http://www.broadinstitute.org/gsea/msigdb/cards/LIM_MAMMARY_STEM_CELL_DN.html Genes consistently down-regulated in mammary stem cells both in mouse and human species. 20346151 351/695 Daniel Hollern 2.86981768551197e-40 6.72398283715456e-38 5 750.030303030303 25 8.69641722882418e-42 2 1.36520542464425 -1.32721610824195 -1 11.497744126939 3 M2580 LIM_MAMMARY_LUMINAL_MATURE_DN http://www.broadinstitute.org/gsea/msigdb/cards/LIM_MAMMARY_LUMINAL_MATURE_DN.html Genes consistently down-regulated in mature mammary luminal cells both in mouse and human species. 20346151 102/176 Daniel Hollern 1.39627274483801e-57 1.63573352057773e-54 5 145.212121212121 26 4.23112952981216e-59 1 2.06322986017829 2.11247072171361 1 40.7998942342838 4 M9192 CHARAFE_BREAST_CANCER_LUMINAL_VS_MESENCHYMAL_DN http://www.broadinstitute.org/gsea/msigdb/cards/CHARAFE_BREAST_CANCER_LUMINAL_VS_MESENCHYMAL_DN.html Genes down-regulated in luminal-like breast cancer cell lines compared to the mesenchymal-like ones. 16288205 330/762 Arthur Liberzon 8.73557874623935e-31 1.04961338474045e-28 10 300.69696969697 44 2.64714507461802e-32 1 1.76470722236572 1.84130739656421 1 19.360028367459 5 M19391 LIU_PROSTATE_CANCER_DN http://www.broadinstitute.org/gsea/msigdb/cards/LIU_PROSTATE_CANCER_DN.html Genes down-regulated in prostate cancer samples. 16618720 318/808 Arthur Liberzon 2.0046369452984e-61 3.1312429085561e-58 5 237.575757575758 49 6.07465740999522e-63 3 1.96007954278596 2.10849250017935 1 41.3917790000035 6 M17079 VECCHI_GASTRIC_CANCER_ADVANCED_VS_EARLY_UP http://www.broadinstitute.org/gsea/msigdb/cards/VECCHI_GASTRIC_CANCER_ADVANCED_VS_EARLY_UP.html Up-regulated genes distinguishing between two subtypes of gastric cancer: advanced (AGC) and early (EGC). 17297478 124/324 Arthur Liberzon 7.41399090691941e-33 9.92627468280696e-31 15 216.848484848485 75 2.24666391118771e-34 4 1.99097376206559 2.09165789597048 1 21.9804566682681 7 M1804 WANG_SMARCE1_TARGETS_UP http://www.broadinstitute.org/gsea/msigdb/cards/WANG_SMARCE1_TARGETS_UP.html Genes up-regulated in BT549 cells (breast cancer) by expression of SMARCE1 [GeneID=6605] off a retroviral vector. 16135788 184/460 John Newman 2.14058950681673e-35 3.34360080964773e-33 50 174.030303030303 76 6.48663486914166e-37 3 1.80830216284195 1.93585210021976 1 21.8191203245899 8 M14043 PETRETTO_CARDIAC_HYPERTROPHY http://www.broadinstitute.org/gsea/msigdb/cards/PETRETTO_CARDIAC_HYPERTROPHY.html Genes that correlated most highly with left ventricular mass (LVM) index. 18443592 36/74 Jessica Robertson 2.53629414087888e-20 1.44153391916388e-18 45 257.575757575758 78 7.68573982084512e-22 3 2.41178393664563 2.431042740207 1 16.4091533919893 9 M1655 HAN_JNK_SINGALING_DN http://www.broadinstitute.org/gsea/msigdb/cards/HAN_JNK_SINGALING_DN.html Genes down-regulated in 3T3 cells (fibroblast) upon activation of JNK pathway. 12354774 29/65 John Newman 5.66044382921729e-10 7.47178585456682e-09 5 368.121212121212 88 1.71528600932447e-11 4 1.84811766771753 1.9297441173229 1 5.44627651907644 10 M1246 LI_WILMS_TUMOR_VS_FETAL_KIDNEY_2_DN http://www.broadinstitute.org/gsea/msigdb/cards/LI_WILMS_TUMOR_VS_FETAL_KIDNEY_2_DN.html Genes down-regulated in Wilm's tumor vs fetal kidney. 15531917 39/104 Arthur Liberzon 3.65824518033698e-19 1.80447757000622e-17 60 216.424242424242 90 1.10855914555666e-20 12 2.11701073451039 2.15242560535103 1 12.2132591019314 11 M14507 CHARAFE_BREAST_CANCER_LUMINAL_VS_BASAL_DN http://www.broadinstitute.org/gsea/msigdb/cards/CHARAFE_BREAST_CANCER_LUMINAL_VS_BASAL_DN.html Genes down-regulated in luminal-like breast cancer cell lines compared to the basal-like ones. 16288205 335/782 Arthur Liberzon 2.53684213356275e-26 2.47659213289063e-24 30 283.151515151515 100 7.68740040473559e-28 8 1.70911898774014 1.83053746000883 1 19.7019693963433 12 M7439 DACOSTA_ERCC3_ALLELE_XPCS_VS_TTD_DN http://www.broadinstitute.org/gsea/msigdb/cards/DACOSTA_ERCC3_ALLELE_XPCS_VS_TTD_DN.html Genes down-regulated in fibroblasts expressing different mutant forms of ERCC3 [GeneID=2071]: XP/CS (xeroderma pigmentosum (XP) and Cockraine's syndrome (CS)) vs TTD (trichothiodystrophy). 15608684 31/72 Arthur Liberzon 1.4379206725616e-16 5.52302973083906e-15 20 216.69696969697 103 4.35733537139878e-18 9 2.11661043166828 2.12834774928256 1 8.72371422476916 13 M1348 SCHAEFFER_PROSTATE_DEVELOPMENT_12HR_UP http://www.broadinstitute.org/gsea/msigdb/cards/SCHAEFFER_PROSTATE_DEVELOPMENT_12HR_UP.html Genes up-regulated in the urogenital sinus (UGS) of day E16 females exposed to the androgen dihydrotestosterone [PubChem=10635] for 12 h. 18794802 94/214 Jessica Robertson 5.73292039421445e-18 2.55852047307514e-16 110 317.969696969697 106 1.73724860430741e-19 16 2.05125450548349 2.17199068790093 1 15.5214686666325 14 M6154 MAHAJAN_RESPONSE_TO_IL1A_UP http://www.broadinstitute.org/gsea/msigdb/cards/MAHAJAN_RESPONSE_TO_IL1A_UP.html Genes up-regulated in corneal fibroblasts after treatment with IL1A [GeneID=3552]. 12091409 60/143 John Newman 2.40778457732398e-11 3.98871373526958e-10 410 292 108 7.29631690106695e-13 6 1.96620083096638 2.05702927125296 1 11.9489724968097 15 M631 REACTOME_COLLAGEN_FORMATION http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_COLLAGEN_FORMATION.html Genes involved in Collagen formation 25/64 Reactome 5.56279454334894e-17 2.22797053249001e-15 5 376.333333333333 110 1.68569531616635e-18 4 2.48862080134389 2.48862080134389 1 10.7348487977146 16 M1579 BURTON_ADIPOGENESIS_8 http://www.broadinstitute.org/gsea/msigdb/cards/BURTON_ADIPOGENESIS_8.html Progressively down-regulated 8-96 h during differentiation of 3T3-L1 cells (fibroblast) into adipocytes. 15033539 85/182 John Newman 1.922907580308e-08 1.5863987537541e-07 50 564.454545454545 116 5.82699272192614e-10 9 1.77063915479987 1.92125898710792 1 4.28327883173906 17 M12602 WOO_LIVER_CANCER_RECURRENCE_UP http://www.broadinstitute.org/gsea/msigdb/cards/WOO_LIVER_CANCER_RECURRENCE_UP.html Genes positively correlated with recurrence free survival in patients with hepatitis B-related (HBV) hepatocellular carcinoma (HCC). 18381945 90/200 Yujin Hoshida 1.66877070407087e-18 7.81985951927612e-17 65 252.181818181818 118 5.05688092142691e-20 21 1.95720418745831 2.08095917568463 1 13.6408843366798 18 M8519 DAVICIONI_MOLECULAR_ARMS_VS_ERMS_DN http://www.broadinstitute.org/gsea/msigdb/cards/DAVICIONI_MOLECULAR_ARMS_VS_ERMS_DN.html Genes down-regulated in mARMS (molecular ARMS) compared to the mERMS (molecular ERMS) class of rhabdomyosarcoma tumors. 16849537 137/354 Arthur Liberzon 2.19975810991085e-14 5.95841994395505e-13 100 339.757575757576 120 6.66593366639653e-16 39 1.74965699491531 1.83100937561659 1 7.26476150684911 19 M6250 KORKOLA_YOLK_SAC_TUMOR http://www.broadinstitute.org/gsea/msigdb/cards/KORKOLA_YOLK_SAC_TUMOR.html Genes predicting the yolk sac tumor (YS) subtype of nonseminomatous male germ cell tumors (NSGCT). 15870693 40/124 Leona Saunders 1.70210708345405e-17 7.18565206582492e-16 425 324.818181818182 122 5.15790025289104e-19 29 2.07629416944807 2.15822944210999 1 10.6996053187479 20 M2030 NAKAMURA_ADIPOGENESIS_LATE_DN http://www.broadinstitute.org/gsea/msigdb/cards/NAKAMURA_ADIPOGENESIS_LATE_DN.html Genes down-regulated in mesenchymal stem cells during late phase of adipogenesis, defined as days 7 to 14 of culturing with adipogenic hormones. 12646203 37/61 Arthur Liberzon 1.35877982875885e-14 3.81271992668502e-13 5 588.090909090909 123 4.1175146326026e-16 4 2.22039325585261 2.21366213004902 1 8.52701065718806